Module preprocessor.package

Classes

class Meta (version: MetaVersion, last_modified: datetime.datetime, record: Union[MetaRecordCsv, MetaRecordSql, MetaRecordMongo, MetaRecordModel, MetaRecordJson, MetaRecordWordEmbedding, MetaRecordAWSs3BucketStorage, MetaRecordAzureDataLakeStorage, MetaRecordDatabaseReport, MetaRecordReportResult, MetaRecordModelFolder])

Meta(version: preprocessor.package.MetaVersion, last_modified: datetime.datetime, record: Union[preprocessor.package.MetaRecordCsv, preprocessor.package.MetaRecordSql, preprocessor.package.MetaRecordMongo, preprocessor.package.MetaRecordModel, preprocessor.package.MetaRecordJson, preprocessor.package.MetaRecordWordEmbedding, preprocessor.package.MetaRecordAWSs3BucketStorage, preprocessor.package.MetaRecordAzureDataLakeStorage, preprocessor.package.MetaRecordDatabaseReport, preprocessor.package.MetaRecordReportResult, preprocessor.package.MetaRecordModelFolder])

Ancestors

• IsDict
• abc.ABC

Class variables

var SCHEMA_V1

var SCHEMA_V2

var SCHEMA_VERSION

var last_modified : datetime.datetime

var record : Union[MetaRecordCsv, MetaRecordSql, MetaRecordMongo, MetaRecordModel, MetaRecordJson, MetaRecordWordEmbedding, MetaRecordAWSs3BucketStorage, MetaRecordAzureDataLakeStorage, MetaRecordDatabaseReport, MetaRecordReportResult, MetaRecordModelFolder]

var version : MetaVersion

Static methods

def from_record(valid: dict) -> Union[MetaRecordCsv, MetaRecordSql, MetaRecordMongo, MetaRecordModel, MetaRecordJson, MetaRecordWordEmbedding, MetaRecordAWSs3BucketStorage, MetaRecordAzureDataLakeStorage, MetaRecordDatabaseReport, MetaRecordReportResult, MetaRecordModelFolder]

def promote_v2(valid: dict) -> dict

def validate(input: dict) -> dict

Inherited members

• IsDict:
  • from_dict
  • to_dict

class MetaRecordAWSs3BucketStorage (bucket_name: str, region: str, object_name: str, aws_access_key_id: str, aws_secret_access_key: str)

MetaRecordAWSs3BucketStorage(bucket_name: str, region: str, object_name: str, aws_access_key_id: str, aws_secret_access_key: str)

Class variables

var aws_access_key_id : str

var aws_secret_access_key : str

var bucket_name : str

var object_name : str

var region : str

Static methods

def from_dict(input: dict) -> MetaRecordAWSs3BucketStorage

Methods

def to_dict(self) -> dict

class MetaRecordAzureDataLakeStorage (storage_account_name: str, storage_key: str, file_system: str, path: str)

MetaRecordAzureDataLakeStorage(storage_account_name: str, storage_key: str, file_system: str, path: str)

Class variables

var file_system : str

var path : str

var storage_account_name : str

var storage_key : str

Static methods

def from_dict(input: dict) -> MetaRecordAzureDataLakeStorage

Methods

def get_file_client(self) -> azure.storage.filedatalake._data_lake_file_client.DataLakeFileClient

def to_dict(self) -> dict

class MetaRecordCsv (sheet_path: str, path_column: str, synthesizer_path: Optional[str] = None, synthesizer_type: Optional[str] = None)

MetaRecordCsv(sheet_path: str, path_column: str, synthesizer_path: Optional[str] = None, synthesizer_type: Optional[str] = None)

Class variables

var path_column : str

var sheet_path : str

var synthesizer_path : Optional[str]

var synthesizer_type : Optional[str]

Static methods

def from_dict(input: dict) -> MetaRecordCsv

Methods

def to_dict(self) -> dict

class MetaRecordDatabaseReport (query_template: str, params: Dict[str, ReportParameter], connection: Optional[str] = None, connection_opts: Optional[dict] = None, credentials_info: Optional[dict] = None, federation_group: Optional[str] = None, aggregation_template: Optional[dict] = None, post_processing_script: Optional[str] = None, name: Optional[str] = None, description: Optional[str] = None)

MetaRecordDatabaseReport(query_template: str, params: Dict[str, preprocessor.report_parameters.ReportParameter], connection: Optional[str] = None, connection_opts: Optional[dict] = None, credentials_info: Optional[dict] = None, federation_group: Optional[str] = None, aggregation_template: Optional[dict] = None, post_processing_script: Optional[str] = None, name: Optional[str] = None, description: Optional[str] = None)

Class variables

var aggregation_template : Optional[dict]

var connection : Optional[str]

var connection_opts : Optional[dict]

var credentials_info : Optional[dict]

var description : Optional[str]

var federation_group : Optional[str]

var name : Optional[str]

var params : Dict[str, ReportParameter]

var post_processing_script : Optional[str]

var query_template : str

Static methods

def from_dict(input: dict) -> MetaRecordDatabaseReport

Methods

def to_dict(self) -> dict

class MetaRecordJson (data: str)

MetaRecordJson(data: str)

Class variables

var data : str

Static methods

def from_dict(input: dict) -> MetaRecordJson

Methods

def to_dict(self) -> dict

class MetaRecordModel (model_path: str, model_type: str, unrestricted_data: list, reports: ModelReportRecord, logs: list, data_transformers_path: List = None, target_transformers_path: List = None, vocab_path: str = None, target_map_path: str = None)

MetaRecordModel(model_path: str, model_type: str, unrestricted_data: list, reports: preprocessor.package.ModelReportRecord, logs: list, data_transformers_path: List = None, target_transformers_path: List = None, vocab_path: str = None, target_map_path: str = None)

Class variables

var data_transformers_path : List

var logs : list

var model_path : str

var model_type : str

var reports : ModelReportRecord

var target_map_path : str

var target_transformers_path : List

var unrestricted_data : list

var vocab_path : str

Static methods

def from_dict(input: dict) -> MetaRecordModel

Methods

def to_dict(self) -> dict

class MetaRecordModelFolder (manifest: dict = None)

MetaRecordModelFolder(manifest: dict = None)

Class variables

var manifest : dict

Methods

def from_dict(input: dict) -> MetaRecordModelFolder

def to_dict(self) -> dict

class MetaRecordMongo (query: str, connection: str, database: str, collection: str, projection: str, synthesizer_path: Optional[str] = None, synthesizer_type: Optional[str] = None, limit: Optional[int] = None, sort: Optional[List] = None)

MetaRecordMongo(query: str, connection: str, database: str, collection: str, projection: str, synthesizer_path: Optional[str] = None, synthesizer_type: Optional[str] = None, limit: Optional[int] = None, sort: Optional[List] = None)

Class variables

var collection : str

var connection : str

var database : str

var limit : Optional[int]

var projection : str

var query : str

var sort : Optional[List]

var synthesizer_path : Optional[str]

var synthesizer_type : Optional[str]

Static methods

def from_dict(input: dict) -> MetaRecordMongo

Methods

def to_dict(self) -> dict

class MetaRecordReportResult (manifest: dict = None)

MetaRecordReportResult(manifest: dict = None)

Class variables

var manifest : dict

Methods

def from_dict(input: dict) -> MetaRecordReportResult

def to_dict(self) -> dict

class MetaRecordSql (query: str, connection: str, options: Optional[dict] = None, credentials_info: Optional[dict] = None, synthesizer_path: Optional[str] = None, synthesizer_type: Optional[str] = None)

MetaRecordSql(query: str, connection: str, options: Optional[dict] = None, credentials_info: Optional[dict] = None, synthesizer_path: Optional[str] = None, synthesizer_type: Optional[str] = None)

Class variables

var connection : str

var credentials_info : Optional[dict]

var options : Optional[dict]

var query : str

var synthesizer_path : Optional[str]

var synthesizer_type : Optional[str]

Static methods

def from_dict(input: dict) -> MetaRecordSql

Methods

def to_dict(self) -> dict

class MetaRecordWordEmbedding (vocab_path: str, embedding_path: str)

MetaRecordWordEmbedding(vocab_path: str, embedding_path: str)

Class variables

var embedding_path : str

var vocab_path : str

Static methods

def from_dict(input: dict) -> MetaRecordWordEmbedding

Methods

def to_dict(self) -> dict

class MetaVersion (value, names=None, *, module=None, qualname=None, type=None, start=1)

An enumeration.

Ancestors

• enum.Enum

Class variables

var V1

var V2

class ModelReportRecord (input_shape: List[Union[List[int], int]] = None, output_shape: List[int] = None, model_summary: List[str] = None, library_version: str = None)

ModelReportRecord(input_shape: List[Union[List[int], int]] = None, output_shape: List[int] = None, model_summary: List[str] = None, library_version: str = None)

Class variables

var input_shape : List[Union[List[int], int]]

var library_version : str

var model_summary : List[str]

var output_shape : List[int]

Static methods

def from_dict(kvs: Union[dict, list, str, int, float, bool, ForwardRef(None)], *, infer_missing=False) -> ~A

def from_json(s: Union[str, bytes, bytearray], *, parse_float=None, parse_int=None, parse_constant=None, infer_missing=False, **kw) -> ~A

def schema(*, infer_missing: bool = False, only=None, exclude=(), many: bool = False, context=None, load_only=(), dump_only=(), partial: bool = False, unknown=None) -> dataclasses_json.mm.SchemaF[~A]

Methods

def to_dict(self, encode_json=False) -> Dict[str, Union[dict, list, str, int, float, bool, ForwardRef(None)]]

def to_json(self, *, skipkeys: bool = False, ensure_ascii: bool = True, check_circular: bool = True, allow_nan: bool = True, indent: Union[int, str, ForwardRef(None)] = None, separators: Tuple[str, str] = None, default: Callable = None, sort_keys: bool = False, **kw) -> str

class Package (path: pathlib.Path, meta: Meta, spec: Optional[Spec])

A collection of data for training or computations, along with descriptions of the contents. A Package is essentially an archive (.zip) of files following a special internal structure:

An example Package with simple tabular data would internally look like: filename.zip .meta.json # describes version, creation date, etc some_kind_of_data.csv # the data in this package

Image Package files also contain an internal "records.csv" which associates information such as training labels with images within the package. An example Image Package file would internally look like: filename.zip .meta.json # describes version, creation date, etc records.csv # index of images and labels (for training) images img_001.jpg img_002.jpg

Packages can also contain info to authenticate and query a database, etc.

Class variables

var MANIFEST_FILE

var META_FILE

var SPEC_FILE

Static methods

def create(filename: Union[str, pathlib.Path], record_data: Union[str, pathlib.Path], root: Union[str, pathlib.Path] = None, path_column: Optional[str] = None, label_column: Optional[str] = None, header: Optional[List[str]] = None, spec_override: List[FieldOverride] = [], is_masked: bool = True, unmask_columns: Optional[List[str]] = None, supplemental_named_paths: Optional[Dict[str, str]] = None, supplimental_named_paths: Optional[Dict[str, str]] = None) -> Package

Create a Package using a simple CSV or a CSV describing a folder layout

For the simple case, just define the record_data (the CSV file) and optionally the header list if the first row of the CSV does not hold the name of the columns.

For the more complex case of a folder layout, the CSV is a list of files and must contain several specific columns. * path_column (required): Name of the column holding the associated data file path/filenames * root (optional): The root from which the above paths are relative. If None, paths are relative to the CSV itself. * label_column (optional): Name of the column holding a label describing each file. If there are multiple labels per file, use JSON format to specify the list.

Args

filename : Union[str, Path]

Filename of the Package to create

record_data : Union[str, Path]

Filename of data used to populate this Package.

root : Union[str, Path], optional

Path to the root of the data folder. Default is None

path_column : str, optional

Name of the column in the record_data file which contains paths to data files. If None, the record_data is treated as a simple tabular data file.

label_column : str, optional

Name of the label column. When a path_column exists, this column holds labels associated with the file in the path_column. Multi-label datasets need to be in JSON format.

header : List[str], optional

A list of column names. If None, the first row of the CSV will be used as a header.

spec_override (List[FieldOverride]) = [],

is_masked : bool

Whether or not the data is masked.

unmask_columns : [str], optional

List of individual fields to unmask.

supplemental_named_paths : [Dict[str,str]], optional

This is a dictionary of name:path indicating files to be included in the package

supplimental_named_paths : [Dict[str,str]], optional

Do not use, backwards compatibility for typo.

Returns

Package

The archive object

def create_database_report(filename: Union[str, pathlib.Path], query_template: str, params: Dict[str, ReportParameter], connection: Optional[str] = None, connection_opts: Optional[dict] = None, credentials_info: Optional[dict] = None, federation_group: Union[str, uuid.UUID, ForwardRef(None)] = None, aggregation_template: Optional[dict] = None, post_processing_script: Optional[str] = None, name: Optional[str] = None, description: Optional[str] = None) -> Package

Validate and create a database report Package.

Args

filename : Union[str, Path]

Filename of the package to be created.

query_template : str

The SQL query template containing Mustache template parameters for the report.

params : Dict[str, ReportParameter]

Parameters for this report.

connection : str

The SQLAlchemy compliant connection string that defines where the database resides, as well as how to authenticate with it. See: [https://docs.sqlalchemy.org/core/connections.html]

connection_opts : dict, optional

Dictionary of database connection options.

credentials_info : dict, optional

Dictionary of credentials information if not provided in the connection string.

federation_group : Union[str, UUID, None], optional

The federation group to use when running this report. If present, overrides connection.

aggregation_template : str, optional

The result aggregation to use when running a federated report.

post_processing_script : str, optional

The Python postprocessing script to use when running this report.

post_processing : str, Optional

A Python function or the filename containing a function to run after the report has been executed. The function must have the signature: def postprocess(df: pd.Dataframe, ctx: dict) The two arguments are the report output data frame and a dict holding the user-selected report parameters as context.

name : str, optional

The name of the report.

description : str, optional

The description of the report.

Raises

Exception

Query template must not be blank.

Exception

Report parameters are required.

Exception

Invalid param_type for ReportParameter …

Exception

PARAM does not appear in the query template.

Exception

PARAM missing from params

Exception

Name must be unique for each parameter, PARAM reused.

Returns

Package

The created report package object

def create_from_database(filename: Union[str, pathlib.Path], query: str, connection: str) -> Package

Define a package extracted from a database-held dataset.

Args

filename : Union[str, Path]

Filename of the package to be created.

query : str

The SQL query used to collect the dataset.

connection : str

The SQLAlchemy compliant connection string that defines where the database resides, as well as how to authenticate with it. See: [https://docs.sqlalchemy.org/core/connections.html]

Returns

Package

The archive object

def from_aws_s3_bucket_storage(filename: Union[str, pathlib.Path], bucket_name: str, region: str, object_name: str, aws_access_key_id: str, aws_secret_access_key: str) -> Package

Create a package file referencing an AWS S3 Bucket Storage data file

Args

filename : Union[str, Path]

Filename of the package to be created.

bucket_name : str

Name of the AWS S3 Bucket containing the data file

region : str

The AWS region

object_name : str

The file name, know as object or key in AWS S3

aws_access_key_id : str

Access key for this account, region, bucket

aws_secret_access_key : str

Secret access key for this account, region, bucket

Returns

Package

The created Package object

def from_azure_blob_storage(filename: Union[str, pathlib.Path], storage_account_name: str, storage_key: str, file_system: str, key: str) -> Package

Create a package file referencing a Azure Blob Storage data file

Args

filename : Union[str, Path]

Filename of the package to be created.

storage_account_name : str

The Azure storage account to reference.

storage_key : str

Access token used when pulling files from the storage account.

file_system : str

File system defined in the Azure control panel for the storage account.

path : str

The full path to the file that will be downloaded.

Returns

Package

The created Package object

def from_azure_data_lake_storage(filename: Union[str, pathlib.Path], storage_account_name: str, storage_key: str, file_system: str, path: str) -> Package

Create a package file referencing a Azure Data Lake Storage data file

Args

filename : Union[str, Path]

Filename of the package to be created.

storage_account_name : str

The Azure storage account to reference.

storage_key : str

Access token used when pulling files from the storage account.

file_system : str

File system defined in the Azure control panel for the storage account.

path : str

The full path to the file that will be downloaded.

Returns

Package

The created Package object

def from_image_dataset_folder(output_zip: Union[str, pathlib.Path], path: Union[str, pathlib.Path]) -> Package

Create package from torch style image dataset folder structure

NOTE: labels must be numeric values

Assumes structure: path/ / imgs / imgs

Args

output_zip : Union[str, Path]

Path of output zipfile

path : Union[str,Path]

Path to folder structure

Returns

(Package): Package file holding the given input data.

def from_json(filename: Union[str, pathlib.Path], data: Or(, )) -> Package

Create package from JSON file.

Args

filename : Union[str, Path]

Filename of the package to be created.

data : str

Filename of the data to package

Returns

Package

The created Package object

def from_model(filename: Union[str, pathlib.Path], model_type: str, model_path: Or(, ), unrestricted_data: List[str] = [], reports: Optional[ModelReportRecord] = None, logs: List[str] = [], data_transformers_path: Union[str, pathlib.Path] = '', target_transformers_path: Union[str, pathlib.Path] = '', vocab_path: Union[str, pathlib.Path] = '', target_map_path: Union[str, pathlib.Path] = '', validation_hash: Optional[str] = None) -> Package

Create package from model file.

Args

filename : Union[str, Path]

Filename of the package to create

model_type : str

Model format, i.e. "torch", "keras", etc.

model_path : str

Current location of model to archive

Returns

Package

The created Package object

def from_model_folder(filename: Union[str, pathlib.Path], model_path: Union[str, pathlib.Path], manifest: Dict) -> Package

Create package from model directory.

Args

filename : Union[str, Path]

Filename of the package to be created.

model_path : Union[str, Path]

Path to the model directory

manifest : Dict

The manifest of the model

Returns

Package

The created Package object

def from_numpy(output_zip: Union[str, pathlib.Path], X: Union[, str, pathlib.Path], y: Union[List, , str, pathlib.Path] = None) -> Package

Prepare a single data file from numpy as an appropriately structured Package

Args

output_zip : Union[str, Path]

Path of Package to create

X : np.array

Training data

y : np.array

Training labels

Returns

(Package): Package file holding the given input data.

def from_report_result(filename: Union[str, pathlib.Path], result: pandas.core.frame.DataFrame, manifest: Dict) -> Package

Create a package file referencing a report result

Args

filename : Union[str, Path]

Filename of the package to be created.

result : pd.DataFrame

The result of the report to be packaged.

manifest : Dict

The manifest of the report result

Returns

Package

The created Package object

def from_single_file(output: Union[str, pathlib.Path], input: Union[str, pathlib.Path], is_masked: bool = True, unmask_columns: Optional[List[str]] = None) -> Tuple[Package, bool]

Prepare a single data file as an appropriately structured Package

Args

output : Union[str, Path]

Path of Package to create

input : Union[str, Path]

Path of data to be placed into the Package

is_masked : bool

Whether or not the data is masked.

unmask_columns : [str], optional

List of column names that are unmasked. Default to to mask all columns.

Raises

Exception

Unable to ascertain the proper Package to hold the data

Returns

(Package, bool): Package file holding the given input data, plus a boolean indicating if it is a package of images.

def from_word_embedding(filename: Union[str, pathlib.Path], embedding_path: Union[str, pathlib.Path], vocab_path: Union[str, pathlib.Path] = '') -> Package

Create word embedding package for training

Args

filename : Union[str, Path]

Filename of the package to be created

embedding_path : Union[str, Path]

Path to the source word embedding

vocab_path : Union[str, Path]

Path to the source vocabulary for embedding

Returns

Package

The created Package object

def load(path: Union[str, pathlib.Path], validation_hash: Optional[str] = None) -> Package

Instantiates a Package object from a file

Args

path : Union[str, Path]

The file, must already be in package format

validation_hash : Optional[str], optional

The expected hash of the

package contents. The router stores the hash at asset registration. Defaults to None. Will bypass check.

Returns

Package

A Package instance

def reference_from_database(filename: Union[str, pathlib.Path], query: str, connection: str, options: Optional[dict] = None, credentials_info: Optional[dict] = None) -> Package

Define a package referring to a database-held dataset.

Args

filename : Union[str, Path]

Filename of the package to be created.

query : str

The SQL query which will be used to collect the dataset.

connection : str

The SQLAlchemy compliant connection string that defines where the database resides, as well as how to authenticate with it. See: [https://docs.sqlalchemy.org/core/connections.html]

options : Optional, dict

Dictionary of database connection options.

credentials_info : Optional, dict

Dictionary of credentials information if not provided in the connection string.

Returns

Package

The archive object

def reference_from_mongo_database(filename: Union[str, pathlib.Path], query: str, connection: str, database: str, collection: str, projection: dict = {}, limit: Optional[int] = None, sort: Optional[List] = None) -> Package

Define a package referring to a database-held dataset.

Args

filename : Union[str, Path]

Filename of the package to be created.

query : str

JSON dictionary which is compatible with pymongo.

connection : str

Mongo connection uri. See: [https://docs.mongodb.com/manual/reference/connection-string/]

Returns

Package

The archive object

Instance variables

var filename : str

var meta : Meta

var path : pathlib.Path

var spec : Spec

Methods

def create_sqlalchemy_engine(self) -> sqlalchemy.engine.base.Engine

Create a SQLAlchemy engine for the package's database

Returns

sqlalchemy.engine.Engine

The engine

def get_data_transforms(self)

def get_manifest_html(self)

def get_model_misclassifications(self) -> List[pandas.core.frame.DataFrame]

Get information about failed test cases during model training

If the final model failed to produce correct results for any of the labeled test data, a sample of "unrestricted" information about those failures is returned. The unrestricted data is declared by the dataset owner when they mark a data column as Unmasked.

A maximum of 10 records are returned per client.

Returns

List[pd.Dataframe]

Dataframes holding the unmasked data for failures, up to one per client

def get_package_type(self) -> PackageType

Get the category of the packaged data

Returns

PackageType

An indication of the content of the package

def get_target_mapping(self)

def get_target_transforms(self)

def get_vocab(self)

def get_word_embedding(self)

def hash_contents(self)

Hashes the contents of the Package

For all Package types, hash the concatenated CRC-32 values of files in the package, excluding spec files. For database variant Packages, the database query is stored in metadata and also gets hashed.

Note: The hash is not stored in the Package.

Returns

string

hexdigest of sha256 hash

def iter_records(self) -> PackageIterator

def model(self)

Extract model contained in package to memory

Possible model_types include: * keras * pytorch * sklearn * recommender * onnx: A ModelProto object * xgboost: xgboost.XGBClassifier or xgboost.XGBRegressor * pmml_regression: A privophy.RegressionModel or privophy.GeneralRegressionModel object * pmml_tree * network_builder: JSON describing the TripleBlind model (e.g. split NN, vertical network)

Returns

Or[Pytorch, Keras, SKlearn, XGBoost, Recommender models, PMMLRegression, JSON]

The model

def model_pointer(self) -> Tuple[str, object]

Return model type and file pointer directly to model file path inside of the zip file. model_types include: keras, pytorch, sklearn, recommender, and xgboost

Returns

Tuple[model_type as string, zip file pointer to model path]

def perform_database_report(self, report_values) -> pandas.core.frame.DataFrame

def populate_database_report_template(self, report_values) -> str

def populate_spec(self, force: bool = False)

def record_data(self) -> pandas.core.frame.DataFrame

def record_data_as_file(self)

def records(self) -> pandas.core.frame.DataFrame

def records_chunked(self, chunksize: int) -> Iterator[pandas.core.frame.DataFrame]

def regenerate_spec(self)

async def substitute_connection_secrets(self, secret_store)

Use the Access Point provided secret store to replace handlebar variables in connection strings.

def substitute_connection_secrets_sync(self, secret_store)

def validate_db_connection(self)

def validate_sql(self)

Run an SQL linter on the query to validate syntax.

Raises

ValueError

Failed SQLFluff linter. Content is a list of error strings in the format: ["Line {line_no}, Position {column_no}: {error message}", …]

class PackageIterator (parent: Package, zip: zipfile.ZipFile, df: pandas.core.frame.DataFrame)

Helper for walking through the contents of a Package file

Ancestors

• collections.abc.Iterator
• collections.abc.Iterable
• typing.Generic

class PackageType (value, names=None, *, module=None, qualname=None, type=None, start=1)

An enumeration.

Ancestors

• enum.Enum

Class variables

var AWS_S3_BUCKET_STORAGE

var AZURE_DATA_LAKE_STORAGE

var CSV

var DATABASE_REPORT

var JSON

var MODEL

var MODEL_FOLDER

var MONGO

var REPORT_RESULT

var SQL

var WORD_EMBEDDING